PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114560001
Common NameGSBRNA2T00114560001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 642aa    MW: 72917 Da    PI: 9.4221
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114560001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.46.3e-2690177497
               DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                          +rl+se+DeivlLqG+id    +g +p  d   ++e +k+s sf+++ +q++eK r +++K+++k+ +   g++ s s++h+qk+f+lsk
  GSBRNA2T00114560001  90 RRLFSEKDEIVLLQGVIDS---KGENPLGDYRSLFESMKGSFSFDITLRQFSEKFRTMRRKYTTKEMR---GEQASASNPHQQKCFQLSK 173
                          79****************8...999*****************************************99...******************* PP

               DUF573  94 kiWg 97 
                           iWg
  GSBRNA2T00114560001 174 AIWG 177
                          ***8 PP

2DUF57389.73.4e-28419508397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                           +rl+se+DeivlLqG++d+   +gk+p +d   +ye +k+s s++v+ +q+ +Kir++ +K++ k+k    +++ s+ ++h+qk+f+ls
  GSBRNA2T00114560001 419 KKRLFSEKDEIVLLQGIVDY---KGKNPLEDKRSLYESMKGSFSSDVTLDQFRDKIRHMNNKYTAKEKS--GEQQASILNPHQQKCFQLS 503
                          58******************...9*******************************************99..99999************** PP

               DUF573  93 kkiWg 97 
                          k iWg
  GSBRNA2T00114560001 504 KAIWG 508
                          ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-2290177IPR007592Protein of unknown function DUF573
PfamPF045047.6E-24420508IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MANNMKHPLE DPPSLSSSAA GEFLFISSQE EDEEDQQHTI FSSDEGEPED PPPRSSSEAL  60
LFGRRISTNV RSKRARRMYT QGEKIGADHR RLFSEKDEIV LLQGVIDSKG ENPLGDYRSL  120
FESMKGSFSF DITLRQFSEK FRTMRRKYTT KEMRGEQASA SNPHQQKCFQ LSKAIWGVEG  180
IAFESANGKS KESKKVDLVT PRKGKNNVQD GSKREDMKKS PHVVIKSDWD ESSFFLGMDF  240
LKEKWTKVPT ETKKKTQEKM KKLHANELEC QKYEEMLKDM KVKCEHDKPP PRHSQSSSKA  300
PARERESQES TKAFTTHRIQ KPNHSTMANN LKHPFEDPPS SPSSSAGEKE IEFVSSQEDE  360
DEEGHQHTIF SSDEDEPEDP PPRSSGEAQL SGRKRLSEGI SSSNVSSKRA KKGQKMGTKK  420
RLFSEKDEIV LLQGIVDYKG KNPLEDKRSL YESMKGSFSS DVTLDQFRDK IRHMNNKYTA  480
KEKSGEQQAS ILNPHQQKCF QLSKAIWGAD GIAFQSANGK LKKSEGRVSK KRDLVSSLKG  540
KKAQEASNYK RGDMKKSSLV EKGSDWDDES SFFLGMDFLK EKWTKLPTET KKGTQEKMKK  600
LHANELECQK FEKMLKTMKD KCAHDKVELL NEVTSLIMAA D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407420KRAKKGQKMGTKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114560001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746334.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A078CC160.0A0A078CC16_BRANA; BnaA04g07880D protein
STRINGBra028105.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.19e-40DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]